rs29777821 SNP Detail

Summary

• ID
  rs29777821
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:12476494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGCCAGGAC TCACCCCGGT
  GGTAGTAAGC GCTTTGCTCC GACTTGTGTC CCCTGACGGA CGCCGTCCGG TTCCCGGAGC
  CGCCACAGGC AGAGGGCGGG GTCAGCCCGC GGCCGTTTCC GCGAGAACGA CTGCAGGGGC
  GGGGCGTCCG AGTGCTGCGA GCTGGGGCTG TTGGGCTCTT AATGTCACAC ACGCAGACCT
  M
  TGGCTGGCTG TGGGAGTGGC TGGCTGGGGT TGGGGTGTGG CTCACCTCAC GTGCTGGAAG
  CCCCCAGGTT GATTTCCACC CAGCTCTGCA CAAATCGGTC GGGGTGCACC CCTGTAGTTC
  CAGCCCTGCG AGGTGGAGGC AGGAGGACCA CAAGTTCAAT GTCATACTGG AGAACTTAAG
  GAATTCGGGG TCACTCTGGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
ss39116712	mCV22708121	ABI	CRAMUS_MOUSE	f	SNP	C	A	A	A
ss148681977	ENSMUSSNP5213902	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
rs29777821					SNP	C	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:12476494 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5278	CpG island 5278	within coordinates
Lgals8	lectin, galactose binding, soluble 8	within coordinates
Rr281011	regulatory region 281011	within coordinates
Rr369646	regulatory region 369646	877 bp downstream
Rr369647	regulatory region 369647	355 bp downstream
Tssr118345	transcription start site region 118345	916 bp downstream
Tssr121453	transcription start site region 121453	500 bp upstream
Tssr121454	transcription start site region 121454	196 bp upstream
Tssr121455	transcription start site region 121455	93 bp upstream
Tssr121456	transcription start site region 121456	64 bp upstream
Tssr121457	transcription start site region 121457	40 bp upstream