rs29778055 SNP Detail

Summary

• ID
  rs29778055
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121279405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAG AGGCTCGGAG ACCGGGGAAC
  Y
  GCACTAAGTT TAGCTCCAGA GAACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45363442	mCV22586327	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss147386355	ENSMUSSNP286498	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss320483210	CHEV_2_121274660	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29778055					SNP	T	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121279405 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12159	CpG island 12159	within coordinates
Gm22953	predicted gene, 22953	1746 bp downstream
Gm75262	predicted gene, 75262	within coordinates
Rr55495	regulatory region 55495	within coordinates
Rr397250	regulatory region 397250	191 bp upstream
Serf2	small EDRK-rich factor 2	274 bp upstream
Tssr19771	transcription start site region 19771	438 bp upstream
Tssr19772	transcription start site region 19772	1382 bp upstream
Tssr25936	transcription start site region 25936	1271 bp downstream