rs29778474 SNP Detail

Summary

• ID
  rs29778474
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:112499004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGAACCT GTGGCATTTC
  ATCTTGAATA TCTCGCCACC CATACATCTT TTCTGGTGAA ATGTCTATTG TAATCTTCTG
  CCATTCTTCA AGAGTTTGTT TTCTTGTCAT TCAGCTCTGA AAGCTGATAT ACATTCTAAT
  TATAAGCCTT CTGTTACAAA TCATGTGTGA TTTGTAAATA TTTCCTCCTG TTGTCTGAGT
  Y
  GTCTTTAGTT TATTAAGAAA ACACTGGTTT TACAATTTAA AAAAAAATAG TTGAGTGTTG
  GTGACTATTT GTCTTCTGGT TAAAAAAGTA TGTTCTAAAT ATGAAAGAGA TAAATTGAAA
  TGCAATTAAA TGTGAATGGT TTTCATTTTT ATAAAAAAAT CACTAAAAAC AAGATTGAAT
  AACAAAACTT TTGAAGTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss39117395	mCV23355088	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss145237600	ENSMUSSNP3857622	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs29778474					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:112499004 () rs orientation: forward

Symbol	Name	Function Class
Ankrd55	ankyrin repeat domain 55	within coordinates
Gm48837	predicted gene, 48837	within coordinates
Rr278286	regulatory region 278286	508 bp distal
Rr282338	regulatory region 282338	742 bp proximal
Tssr121108	transcription start site region 121108	947 bp upstream
Tssr121109	transcription start site region 121109	976 bp upstream