rs29778635 SNP Detail

Summary

• ID
  rs29778635
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:88969895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCCCCCG CAGCCGCCGC
  GGCAGCAGCG TGAGCCGTAG TCACTGCTGG CCGCTTCGCC TGCGGTGCGC GCACGGAAAT
  CGGGGAGCCA GGAACCCAAG GAGCCCGCGC TCCGCCCGCT GTGCCTCTGC TAGGACCCAC
  TCGCAGCCCC AGCCTCTCTC AAGCGCACCC ACCTCCGCGC ACCCCAGCTC AGGCGAAGCT
  R
  GAGTGAGGGG TGAATCACCC TTTCTCTAGG GCCACCACTC TTTTATCGCC CTTCCCAAGA
  ATTTGAGGAA GCGCTGCGGG AGGAAAGACG TCCTCTTGAA TCTCTGACAG GGCGGGGTTT
  ACTGCTGTCC TGCAGGGCCG CCTCGCCTAC TGTGCCCTCC GCTACGACCC CGGACCAGCC
  CAGGTCACGT CCGTGAGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39116608	mCV22584373	ABI	CRAMUS_MOUSE	f	SNP		A	G	G
ss144874022	ENSMUSSNP1992643	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29778635					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:88969895 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5919	CpG island 5919	within coordinates
Cpgi5920	CpG island 5920	1862 bp proximal
Edil3	EGF-like repeats and discoidin I-like domains 3	within coordinates
Rr483401	regulatory region 483401	124 bp distal
Rr483402	regulatory region 483402	496 bp distal
Tssr120562	transcription start site region 120562	256 bp downstream
Tssr120563	transcription start site region 120563	196 bp downstream
Tssr120564	transcription start site region 120564	185 bp downstream
Tssr120565	transcription start site region 120565	173 bp downstream
Tssr120566	transcription start site region 120566	153 bp downstream
Tssr120567	transcription start site region 120567	100 bp downstream
Tssr120568	transcription start site region 120568	92 bp downstream
Tssr120569	transcription start site region 120569	57 bp downstream
Tssr120570	transcription start site region 120570	37 bp downstream
Tssr120571	transcription start site region 120571	15 bp downstream
Tssr120572	transcription start site region 120572	106 bp upstream
Tssr120573	transcription start site region 120573	140 bp upstream
Tssr120574	transcription start site region 120574	167 bp upstream
Tssr120575	transcription start site region 120575	1815 bp upstream
Tssr123374	transcription start site region 123374	within coordinates