rs29778806 SNP Detail

Summary

• ID
  rs29778806
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:45826549 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGTT TTGGAGTGGT ATGTCCTATG
  Y
  CCCAGGTGAG GCATTTAGAA ATAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45860151	mCV22817590	ABI	CRAMUS_MOUSE	f	SNP		T	C					T		C
ss51715811	NES14748525	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C		C	C	C	C		C	C	C		T
ss148353178	ENSMUSSNP150963	ENSEMBL	ENSEMBL_Sanger	f	SNP			C							C
ss321527215	CHEV_5_46060446	CHEVERUD	SCREENING_POP	f	SNP													C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29778806					SNP	T	T	C	C	C	T	C	T	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51715811	NES14748525	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:45826549 () rs orientation: forward

Symbol	Name	Function Class
1600023N17Rik	RIKEN cDNA 1600023N17 gene	within coordinates
Cpgi15841	CpG island 15841	38 bp proximal
Ncapg	non-SMC condensin I complex, subunit G	712 bp upstream
Rr367838	regulatory region 367838	375 bp upstream
Rr611093	regulatory region 611093	580 bp distal
Rr611094	regulatory region 611094	696 bp distal
Rr611095	regulatory region 611095	291 bp distal
Rr611096	regulatory region 611096	222 bp proximal
Rr611097	regulatory region 611097	463 bp proximal
Tssr46141	transcription start site region 46141	677 bp upstream
Tssr46142	transcription start site region 46142	700 bp upstream
Tssr46143	transcription start site region 46143	797 bp upstream
Tssr46144	transcription start site region 46144	1026 bp upstream