rs29778916 SNP Detail

Summary

• ID
  rs29778916
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92702038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGGGCCAC ATGTTGCTTT
  AACTCATGGT AAGAAGACCA AAGAATAGCC AACCTCTCAG AAGTTAAACG AGCACTTGCT
  GTTGTGAAGA ACAGGAATTC AGTTCCAAGC ACCCATGTCA GACTGCTCAC AACCACACAT
  AATTCAAGTT CTAGGGGATC TGGCGCCCCC TTCTGGCCTC TCTGGGAATA TACATATGGA
  Y
  ACAGGCAAAC ATAGACACGC ACACAAAAAA ATTAAAATAA ATAAGAATAG CCACTCAGCA
  GCTCTGAAAA ATAGCATAAA TGATCAGTGC TTATGTGTGT GGTTTAAAGT GACTTGTGTC
  TAGCTTTTTG TTGTGGTCAG CATTCCTGGT AACCCTTCTA GAGTTACCTT CTCCCTTAAT
  CTGGGTCTTA GGAAGTGTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45863330	mCV23636400	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss148834746	ENSMUSSNP393521	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29778916					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92702038 () rs orientation: forward

Symbol	Name	Function Class
Fam47e	family with sequence similarity 47, member E	890 bp upstream
Tssr47317	transcription start site region 47317	856 bp upstream