rs29778927 SNP Detail

Summary

• ID
  rs29778927
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:158566647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTCTTCATCT TTTGCTCTGT TTAGTTTCAG ACAGGGTTTC CCTGGGTAAG TTCACTGGTC
  TCAAAGTTTA CTATGTAGCC CAGGCTGGCC TCCAACTCCT AATCCTCTTC CCCAGTCTCT
  TGAGTGTTCT TGAGTGGGGG GGTCCTCATT CTTAACTTTC AATTGGTACA AGCATAAGTT
  TGCAGGCCTG GTTTGAGCTT ACAAAGAGCA ATTGGCTGAC TCCTGCACTA TAAAACATAC
  TAGTTAGTCT TAATTTCTTT CTTTCTTTCT TTCTTTCTTT CTTTCTTTCT TTCTTTCTTT
  M
  TTTCTTCCTT CCTTCCTTCC TTTTTTTTTT TTTTTCTTTT TTCGAGACAG GGTTTCTCTG
  TATAGCCCTG GCTGTCCTGG AACTCACTTT GTAGACCAGG CTGGCCTCGA ACTCAGAAAT
  CTGCCTGCCT CTGCCTCCTG AGTGCTGGGA TTAAAGGTGT GTGCCACCAC GCCCGGCTCG
  CTCTTTCTTT CTTTCTTTCT TTCTTTCTTT CTTTCTTTCT TTCTTTCTTT CTTTCTTTCT
  TCCTTCCTTC CTTCCTTCCT TCCTTCCTTC CTTTCTTTCT CTCCCCCTCT TTCTCTTTCT
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45363916	mCV22655664	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs29778927					SNP	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158566647 () rs orientation: forward

Symbol	Name	Function Class
Ppp1r16b	protein phosphatase 1, regulatory subunit 16B	Intron
Rr367352	regulatory region 367352	1437 bp downstream
Rr367353	regulatory region 367353	1171 bp downstream
Rr568830	regulatory region 568830	507 bp distal
Rr568831	regulatory region 568831	1703 bp proximal
Tssr21375	transcription start site region 21375	1277 bp downstream
Tssr21376	transcription start site region 21376	1260 bp downstream