rs29779096 SNP Detail

Summary

• ID
  rs29779096
• Variation Type
  SNP
• Alleles
  A/C/G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118595879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CAGGTCACCT GCCAACTCGG GTGGCCACCA CACCTTTAGG GCCTACGTCA GATGGACTTT
  ATTGGTAGCA TCTGGAAAGA TACAGTTGGA GCCAACTTCA AGAACAGGAT TGCTGGAAGT
  CCAAGCTTCT CTCTAGGGGA CATCTGCCCA GGAGGAAAGG CTTAAGTCCA TAGAGGTAGC
  GCTGCTCAGA CCCTCTACCC CATTTCTGTC AGTGTGGACA TCCCCACTGC TCTCCCCCAC
  CCCCGCTCCT GTGGGAGACT GGTTGACTGA GTATAGTGTT TGGCCCTTGG CCAGATGGGA
  N
  GGTGAGATGG GATGGTGGAT TCCAGTCTCC TTCCTCCTTA CAGGCAATGG CTCTTATGTC
  TTTATAACAC CAGGTGGCTA TCCCTCAGTG AGTCATATGA TGATAACATT CAAATACCTA
  GCAACATCCA TATTTGGAAT AGTATGTAGC CAGAGCAAGG TTCAGGCCGT TTTCCTCCTG
  CCTCAGGCAA CTGCGCGGTG GTCATCTCCT CAGTTGAAGG AGTGCCTAAG GCTGCCTGCC
  TCCCTCAGTT CTGGGGTCTG AGTATGTCAC AGTCATCTAG TGTGTGGACG AGGGGCCATT
                                                                   
  
  N = A/C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45209467	mCV22541624	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	T
ss45290468	mCV22541635	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	T
ss45315322	mCV22541623	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	A
ss45363713	mCV22541614	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs29779096					SNP	C	C	?	?

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118595879 () rs orientation: forward

Symbol	Name	Function Class
Rr397216	regulatory region 397216	489 bp downstream
Rr563327	regulatory region 563327	462 bp distal
Rr563328	regulatory region 563328	702 bp distal
Rr563329	regulatory region 563329	within coordinates
Rr563330	regulatory region 563330	1093 bp proximal
Rr563331	regulatory region 563331	1433 bp proximal