rs29779275 SNP Detail

Summary

• ID
  rs29779275
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:114116096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GTTAAAAGGT TAGAAACACC AGCCTAATGG AATTATGCTT AGCAACAAAA TGAAATGTAG
  ATTATATATC GATGAGTATA ATTATCTTAA AGGCATCGAT AAGAGTTGGT TAGTTCACTT
  AGTTTTGATC CCTAGTTACC AGGGTTTGGG TTTTAAAGCA GCTTATTGAG TCACGTGAAT
  GAGCTTAGAC ACATTGTGCT CTCTAGGTCT GCAGAACAGA CTTGGGAATC GTAGGTAGTC
  GGATCTCAGT TCGGACTCTG CAAACACGTA GCTAAGTGCA GCAGATAACA GAAGGAGCAT
  Y
  CTTACCCCTC CAACACGCAG ACTAGCAAAT GAGAACTTTT ACTCTCGGTG CGTTTCAGAT
  CCGTTCTGTA GAGAAACGGA TCTCTGTTCT CTCCTGTCTT TTTCCCGTCC TCACTCACTT
  AAGAGCAAGT GCCATCCTGA AGTTGTTGTC ACCTATCTTA TCTAGGGCAC GCTGTCCTGC
  TTCCCTTCCT AGTCATGTTT CCAGGTGAGG TGCAAGAGAT TTTATGGACA GCTTCAGTTC
  AGAAGTGTAT TATGTAATGT ATTGGAATAT ACTTTCCAAT TCCATGTCTG AGCGTGTATA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39117104	mCV24442791	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29779275					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:114116096 () rs orientation: forward

Symbol	Name	Function Class
Arl15	ADP-ribosylation factor-like 15	within coordinates
Tssr121196	transcription start site region 121196	1921 bp upstream