rs29779398 SNP Detail

Summary

• ID
  rs29779398
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24532609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAACCCCATT TTCAGATGGG GGACACAAGC CCCTCAGCAT
  CCAGGCAAAG GCAGCCCACC ATAGGGACCA GGGGCAACAG CACAGCCAGC AATCTTGCTC
  Y
  CAAACCTGCC TGGGGAGAAC TAGCTTTCCC GGGTGTCAGA AGGCCCCCTG CCCACCCACC
  CTGAGAATTC TCTGGCAGAC CTCTGAGTCA GCTAGAATC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45861450	mCV25226692	ABI	CRAMUS_MOUSE	f	SNP		C	T					T		C
ss47616669	NES10291612	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T		C	C	T	C	C	T	C	C	C
ss148091623	ENSMUSSNP5733317	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29779398					SNP	C	C	T	T	T	C	T	T	C	C	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47616669	NES10291612	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24532609 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15591	CpG island 15591	1646 bp distal
Cpgi15592	CpG island 15592	1951 bp proximal
Gm15589	predicted gene 15589	within coordinates
Kcnh2	potassium voltage-gated channel, subfamily H (eag-related), member 2	within coordinates
Tssr50305	transcription start site region 50305	1660 bp downstream
Tssr50306	transcription start site region 50306	1945 bp downstream