rs29779457 SNP Detail

Summary

• ID
  rs29779457
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:5349230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACTTGTTG GTGGTGTTGT
  TCTTATATCA GTCATGGGCA GAGCAGATGA CAATCCCTTG TTCATCCTAG CTTGATGCCT
  GGTATGGTGG CCAAAGCTGT TTTGTGCCTA GGACACCTAA AATCCAATCA AGTGAAATCA
  AATCCAGGTA GCACAGCTCA GGAGGAGGAA GACAGATATA GACCTGCCAA CCACCATGCC
  R
  CCCACAAACC TGCACTCCAG AGCAAGGCAC AGGCTGGACC ATAGACACCC ACTTGCAGCC
  ACACCACACA GAGCAGATGA AGGATGGCAC CCAGGGACCC ACCAGCCACA TGGCCAACCT
  GAGAAGGAGC CACCACAATG TGCGAGCATG TGGTGGTCAT ATGGGAGAGA AAGAGGAGCA
  GAGCAGCACT GTGAGGAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39616163	mCV25013675	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A	A
ss146577979	ENSMUSSNP1821546	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		A
ss325518184	CHEV_18_5349228	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29779457					SNP	G	G	A	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:5349230 () rs orientation: forward

Symbol	Name	Function Class
Gm50064	predicted gene, 50064	within coordinates
Gm52372	predicted gene, 52372	81 bp downstream
Gm58537	predicted gene, 58537	within coordinates
Rr370337	regulatory region 370337	1905 bp downstream