rs29779518 SNP Detail

Summary

• ID
  rs29779518
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:103572071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAATCATTA ATTAATTCCC TCATTCATCA CACCTGTACC
  AAAGCCTCAG GGGCTGGGGA ACCTGGGATT GCAGCTTGCC CGGAGAAGCC AGACGAGCCT
  Y
  TTCTCTCCAT TTTGAGGAGA TCCTTAAAGT AAATAAAGGT CCATATAGGA TCTCAGACAA
  AATTAACCCT GTATGTGTTA CTGAATGTAT TAGTAACCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45861354	mCV24430831	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	T
ss148945501	ENSMUSSNP6671142	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs29779518					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:103572071 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16135	CpG island 16135	441 bp proximal
Ptpn13	protein tyrosine phosphatase, non-receptor type 13	987 bp upstream
Rr615857	regulatory region 615857	within coordinates
Rr615858	regulatory region 615858	806 bp proximal
Rr615859	regulatory region 615859	1307 bp proximal
Tssr47557	transcription start site region 47557	976 bp upstream
Tssr47558	transcription start site region 47558	997 bp upstream
Tssr47559	transcription start site region 47559	1028 bp upstream
Tssr52160	transcription start site region 52160	1515 bp downstream
Tssr52161	transcription start site region 52161	1543 bp downstream