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rs29779830 SNP Detail
Summary
  • ID
    rs29779830
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr5:116727921 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          ATTTT CTCTGGCCAC TGTAGCACTG
    M
    CGTGCCAACA GTAGATGCAG GGAGG                                      
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129X1/SvJ
A/J
C57BL/6J
DBA/2J
ss45862055 mCV24902572 ABI CRAMUS_MOUSE f SNP C C C C A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
C57BL/6J
DBA/2J
rs29779830 SNP C C C C A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr5:116727921 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi16401 CpG island 16401 1143 bp proximal
Rr618510 regulatory region 618510 583 bp distal
Rr618511 regulatory region 618511 within coordinates
Rr618512 regulatory region 618512 1945 bp proximal
Srrm4 serine/arginine repetitive matrix 4 Intron
Tssr52867 transcription start site region 52867 1610 bp downstream
Tssr52868 transcription start site region 52868 1920 bp downstream
Tssr52869 transcription start site region 52869 1949 bp downstream
Tssr52870 transcription start site region 52870 1996 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory