rs29780296 SNP Detail

Summary

• ID
  rs29780296
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:119823641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCATTCTTC AGTCTCCCCA CCCTCCAGGA TCCTCTCGGG
  GGCGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TTGTGTTGGA GAGGGGTTAC
  R
  AGGGAAGGTA CTCTAGAGTT AGCCCTTAGG ACTTTCTTGC CCTGGGGGCC TTGACTCAAA
  GACCCAGCTG GAGCCCGCCA GGCGGCTGAC TTGCCCCCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45863351	mCV25099858	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss149174096	ENSMUSSNP2570499	ENSEMBL	ENSEMBL_Sanger	f	SNP	G			G
ss321665998	CHEV_5_120135585	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29780296					SNP	G	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:119823641 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16460	CpG island 16460	1487 bp proximal
Tbx3	T-box 3	852 bp downstream
Tbx3os2	T-box 3, opposite strand 2	within coordinates
Tssr1618	transcription start site region 1618	1031 bp downstream
Tssr48472	transcription start site region 48472	1281 bp upstream