rs29780449 SNP Detail

Summary

• ID
  rs29780449
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118714518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAT GCCCCTAACC CGGGGGAGCC
  R
  TCTCCCCACC CTCCAAAACA ATGTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45363750	mCV22801949	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss147316276	ENSMUSSNP4148353	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
ss320472457	CHEV_2_118709773	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29780449					SNP	A	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118714518 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12096	CpG island 12096	243 bp distal
Ivd	isovaleryl coenzyme A dehydrogenase	1130 bp downstream
Rr397218	regulatory region 397218	874 bp downstream
Rr397219	regulatory region 397219	201 bp downstream
Rr563359	regulatory region 563359	332 bp distal
Rr563360	regulatory region 563360	446 bp distal