rs29780496 SNP Detail

Summary

• ID
  rs29780496
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:59159080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTATTTAGAA TCTACTATCA TCTAAACTTT GTCATTTTTG AAGCAAGCTT CTGATTGACC
  CTTCGGTCAT CTCCTCCCCC ATCATAAATG GCAATGACAC TCTATGGATA ATCAGTCTGC
  AAACTATGAT GTTACTCCTC TTTTCTCCTT AATCCTCATA TAATCAGTCT AAAGTCTTGT
  TTTCCCTTAG ATTCCAACTC GATACAGAAT GAACATCTTA ATTTAGGCCA CCATTCTTTC
  TTGCTTTGAT TAGTGAATTA CTCCTACAAC TTATTTTCCA TTGCTTCTTG ATTTTGTTTT
  R
  TTTTGTTTTG TTTTGTTTTG TTTTGTTTTT CTCTATCTAT CTGTGAGGGG AGTGCTTGAG
  AACAAACACT TGTTTTGCTT AAGGACAGAA TCACTTTTAT TCACAATTTC AATATTGAAA
  CTTGAAATGA TCTGTTGACG TTATTTAAAT TACATGCCAA GATTTTCACT CTCTTCAGCT
  TTTACACAAA TAAAATAAAA TCAACCAGAG CCTAACAACA TTTGCCCATC TTCTTTCCCT
  TCTACTTTCC TTTCCTTTTG TCTCTCTTCT TACCAGTTCT TTTGTCCCTG TTTACTATGT
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45860369	mCV23369775	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29780496					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:59159080 () rs orientation: forward

Symbol	Name	Function Class
Gm43394	predicted gene 43394	744 bp upstream
Rr377997	regulatory region 377997	853 bp upstream