rs29781003 SNP Detail

Summary

• ID
  rs29781003
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:61501199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCAGATCA TGTAAATGTA
  ACTTCTGGAG TATGATTCCC AGTTCCACTT AATGCTAGGA TAAGGCTTCT AAAGCTAGAG
  CTTCAGATTA GGGCCCCCTT GGACTTCTTC AACCGAAAAA AAAATCCTGC CCAGCACCCA
  TGTAAGTGAA TTCACAATCC TCTCTAATTG GATCTCTGGG AAAAATGGTG TCTTCTGGTA
  Y
  GAAAAAGCAT CTGTCCCCAC AAAGAACTCA TTCATACAAA CACACAACTT ACAAATAATT
  GACAATAATA TTTTGTAAAG GTAAGAGGTT TTCCCAGTCA AACTCTAATC ACAGAAACCA
  GGACATAACT GGAATGAACT GCATAAGCTT AACACCAAAA TAGAAAATTC TAGGATCAGA
  AAAATTTGAG CCTTGTACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39117911	mCV25104774	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C		C
ss61823449	NES17746815	PERLEGEN	MM_PANEL2	f	SNP	C				T		C		T		C	C	T		T
ss149102531	ENSMUSSNP4658456	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T			C				T
ss324370731	CHEV_13_61454746	CHEVERUD	SCREENING_POP	f	SNP								T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29781003					SNP	C	C	T	C	T	C	C	T	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61823449	NES17746815	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:61501199 () rs orientation: forward

Symbol	Name	Function Class
Cts7	cathepsin 7	within coordinates