rs29781876 SNP Detail

Summary

• ID
  rs29781876
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:91053384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAACT TATATAGTTG GAAGGTGATA
  M
  ATTTTTAAAC CTATTTATTC ATTAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45863838	mCV23643700	ABI	CRAMUS_MOUSE	f	SNP		A	A					A		C
ss61198248	NES16702745	PERLEGEN	MM_PANEL2	f	SNP	A		A	C	C	C	C		C	C	C	A		C	C	A	C		C
ss148818310	ENSMUSSNP6485359	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							C
ss321608516	CHEV_5_91334551	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29781876					SNP	A	A	A	C	C	C	C	A	C	C	C	A	C	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61198248	NES16702745	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91053384 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	within coordinates
Rr614422	regulatory region 614422	1642 bp distal
Tssr47224	transcription start site region 47224	1816 bp downstream
Tssr47225	transcription start site region 47225	1714 bp downstream
Tssr47226	transcription start site region 47226	1645 bp downstream
Tssr47227	transcription start site region 47227	1451 bp downstream
Tssr47228	transcription start site region 47228	1388 bp downstream
Tssr47229	transcription start site region 47229	1367 bp downstream
Tssr47230	transcription start site region 47230	1342 bp downstream
Tssr47231	transcription start site region 47231	1312 bp downstream
Tssr47232	transcription start site region 47232	1165 bp downstream
Tssr47233	transcription start site region 47233	1115 bp downstream
Tssr47234	transcription start site region 47234	1080 bp downstream
Tssr47235	transcription start site region 47235	322 bp downstream
Tssr47236	transcription start site region 47236	283 bp downstream
Tssr47237	transcription start site region 47237	263 bp downstream
Tssr47238	transcription start site region 47238	204 bp downstream
Tssr47239	transcription start site region 47239	199 bp downstream
Tssr47240	transcription start site region 47240	180 bp downstream
Tssr47241	transcription start site region 47241	151 bp downstream
Tssr47242	transcription start site region 47242	126 bp downstream
Tssr47243	transcription start site region 47243	108 bp downstream
Tssr47244	transcription start site region 47244	69 bp downstream
Tssr47245	transcription start site region 47245	52 bp downstream
Tssr47246	transcription start site region 47246	within coordinates
Tssr47247	transcription start site region 47247	34 bp upstream
Tssr47248	transcription start site region 47248	97 bp upstream
Tssr47249	transcription start site region 47249	167 bp upstream
Tssr47250	transcription start site region 47250	305 bp upstream
Tssr47251	transcription start site region 47251	369 bp upstream
Tssr47252	transcription start site region 47252	421 bp upstream
Tssr51812	transcription start site region 51812	1298 bp upstream
Tssr51813	transcription start site region 51813	1281 bp upstream
Tssr51814	transcription start site region 51814	307 bp upstream
Tssr51815	transcription start site region 51815	261 bp upstream
Tssr51816	transcription start site region 51816	228 bp upstream