rs29781883 SNP Detail

Summary

• ID
  rs29781883
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123798607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACACAACAAT TCCAATCACT ACACACAGGG CAGATAGTCC
  TATCAGACAA CACTATCCTG CAACTTCCTC CATCCAAGGG TACTCTTCTT GCCAAAGACT
  Y
  GATCTCATTT AAAGTGACTG CCCAAGTGGC AGGAGAGATG GCTCAGCAAT TACAAGCACC
  TATTGCTCTC AGGGGACCTA GTTCGGTTCC CAGTTAAGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45863845	mCV25275766	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
ss149197432	ENSMUSSNP2397853	ENSEMBL	ENSEMBL_Sanger	f	SNP			C		C
ss321671365	CHEV_5_124110553	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29781883					SNP	C	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123798607 () rs orientation: forward

Symbol	Name	Function Class
Clip1	CAP-GLY domain containing linker protein 1	within coordinates
Rr620238	regulatory region 620238	865 bp proximal
Tssr48802	transcription start site region 48802	1681 bp upstream
Tssr53252	transcription start site region 53252	1107 bp downstream
Tssr53253	transcription start site region 53253	1120 bp downstream