rs29782130 SNP Detail

Summary

• ID
  rs29782130
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40714172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACCA ACTGCTGCTG CTATTGCTTA
  Y
  GGCTTAGATA AGAAGGTAGG CATTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46339112	mCV23403480	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss136338440	ENSMUSSNP2617760	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss322919711	CHEV_9_40610959	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29782130					SNP	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40714172 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21603	CpG island 21603	985 bp distal
Gm57042	predicted gene, 57042	1831 bp upstream
Hspa8	heat shock protein 8	within coordinates
Rr206240	regulatory region 206240	within coordinates
Rr383256	regulatory region 383256	1327 bp downstream
Snord14c	small nucleolar RNA, C/D box 14C	707 bp upstream
Snord14d	small nucleolar RNA, C/D box 14D	1119 bp upstream
Snord14e	small nucleolar RNA, C/D box 14E	1872 bp upstream
Tssr84481	transcription start site region 84481	1592 bp downstream
Tssr84482	transcription start site region 84482	963 bp downstream
Tssr84483	transcription start site region 84483	507 bp downstream
Tssr84484	transcription start site region 84484	220 bp downstream
Tssr84485	transcription start site region 84485	1348 bp upstream
Tssr84486	transcription start site region 84486	1863 bp upstream