rs29782397 SNP Detail

Summary

• ID
  rs29782397
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:48407261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAC TTAGCTTACA AACAAGGCCT
  Y
  TCCAAAAATC ATGTCTTGGT GTGAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46339329	mCV25191851	ABI	CRAMUS_MOUSE	f	SNP							C		T
ss61394052	NES16775932	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		T		T	C		C	T	C		T
ss136454981	ENSMUSSNP135902	ENSEMBL	ENSEMBL_Sanger	f	SNP									T
ss322954390	CHEV_9_48304066	CHEVERUD	SCREENING_POP	f	SNP												T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29782397					SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61394052	NES16775932	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:48407261 () rs orientation: forward

Symbol	Name	Function Class
1700121I08Rik	RIKEN cDNA 1700121I08 gene	18 bp downstream
Cpgi21716	CpG island 21716	within coordinates
Gm5617	predicted gene 5617	within coordinates
Gm70225	predicted gene, 70225	within coordinates
Rbm7	RNA binding motif protein 7	662 bp upstream
Rr195326	regulatory region 195326	740 bp proximal
Rr206379	regulatory region 206379	within coordinates
Rr401354	regulatory region 401354	443 bp downstream
Tssr2862	transcription start site region 2862	63 bp upstream
Tssr84988	transcription start site region 84988	904 bp downstream
Tssr84989	transcription start site region 84989	846 bp downstream
Tssr84990	transcription start site region 84990	741 bp downstream
Tssr84991	transcription start site region 84991	695 bp downstream
Tssr84992	transcription start site region 84992	561 bp downstream
Tssr84993	transcription start site region 84993	510 bp downstream
Tssr84994	transcription start site region 84994	51 bp downstream
Tssr89390	transcription start site region 89390	1553 bp upstream
Tssr89391	transcription start site region 89391	1534 bp upstream
Tssr89392	transcription start site region 89392	1504 bp upstream
Tssr89393	transcription start site region 89393	972 bp upstream
Tssr89394	transcription start site region 89394	688 bp upstream
Tssr89395	transcription start site region 89395	643 bp upstream
Tssr89396	transcription start site region 89396	626 bp upstream