rs29782411 SNP Detail

Summary

• ID
  rs29782411
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45314887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGG CAGGTTATGC CACTTGTCTG
  Y
  GCCTCAGATG AGACAGGATG AAGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46339403	mCV25163668	ABI	CRAMUS_MOUSE	f	SNP		C	T	C
ss136411216	ENSMUSSNP925491	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss322943294	CHEV_9_45211672	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29782411					SNP	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45314887 () rs orientation: forward

Symbol	Name	Function Class
Fxyd2	FXYD domain-containing ion transport regulator 2	within coordinates
Gm68814	predicted gene, 68814	within coordinates
Rr195106	regulatory region 195106	1487 bp distal
Rr195107	regulatory region 195107	1714 bp proximal
Rr200381	regulatory region 200381	1687 bp distal
Rr206351	regulatory region 206351	1913 bp proximal
Rr209195	regulatory region 209195	1114 bp proximal
Tssr84783	transcription start site region 84783	1015 bp downstream
Tssr84784	transcription start site region 84784	963 bp downstream
Tssr84785	transcription start site region 84785	431 bp downstream
Tssr84786	transcription start site region 84786	400 bp downstream
Tssr84787	transcription start site region 84787	379 bp downstream
Tssr84788	transcription start site region 84788	348 bp downstream
Tssr84789	transcription start site region 84789	321 bp downstream