rs29782620 SNP Detail

Summary

• ID
  rs29782620
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:111886241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGTGAATG CACACACCCA
  TGATCCCTTT CTGTCTAGAG ACAATGAGTG GACGCACTCA CATCTTACAA AAGTGACACC
  CTTTTTCACC TTCTCAAGTG TAATCACTCA CTGTTTTTGT TTTTCCTTTA CAGGGAGAGG
  GGGAAAAAAA AAGCCAAACA TTTCTGTTAA ATACAGTTAG TTCAGGCTTT AAGTATTTTA
  Y
  CCACGGTGCA ATGCCTGGTC CTGAGTTTGA CCACACAGAA TAAATTCCTT ATAAGGAGCA
  CAGAGAAGTC AAAAGGAGTG CACTTAAAAA TGTGGGGAGT GGAGCAGGGC TTGGTGGGGC
  ACGCCTGTGA TTCCAGCACT CAGGAGGCAG ACATAGGCAG ATCTCTGTGT TTAAGGCCAG
  CCAGGACGAT ATAGAGACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss39118456	mCV24613956	ABI	CRAMUS_MOUSE	f	SNP	C	C	T				C		C
ss51156721	NES14327282	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C		T	C	C	T	T	T
ss145218882	ENSMUSSNP3411624	ENSEMBL	ENSEMBL_Sanger	f	SNP			T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29782620					SNP	C	C	T	C	C	C	C	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51156721	NES14327282	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:111886241 () rs orientation: forward

Symbol	Name	Function Class
Map3k1	mitogen-activated protein kinase kinase kinase 1	within coordinates
Tssr124031	transcription start site region 124031	1480 bp upstream
Tssr124032	transcription start site region 124032	1269 bp upstream