rs29783188 SNP Detail

Summary

• ID
  rs29783188
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:12474648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGAT CGAAGCCACT TGTGAGCAAG
  Y
  CTGCGACAGG AAGAACAATT GGACC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss39118419	mCV22708355	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs29783188					SNP	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:12474648 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5278	CpG island 5278	1192 bp proximal
Lgals8	lectin, galactose binding, soluble 8	within coordinates
Rr281011	regulatory region 281011	152 bp proximal
Rr369646	regulatory region 369646	816 bp upstream
Rr369647	regulatory region 369647	1382 bp upstream
Tssr118345	transcription start site region 118345	903 bp upstream
Tssr121451	transcription start site region 121451	641 bp upstream
Tssr121452	transcription start site region 121452	485 bp upstream
Tssr121453	transcription start site region 121453	1332 bp downstream
Tssr121454	transcription start site region 121454	1643 bp downstream
Tssr121455	transcription start site region 121455	1665 bp downstream
Tssr121456	transcription start site region 121456	1771 bp downstream
Tssr121457	transcription start site region 121457	1795 bp downstream