rs29783188 SNP Detail

Summary

• ID
  rs29783188
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:12474648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGAT CGAAGCCACT TGTGAGCAAG
  Y
  CTGCGACAGG AAGAACAATT GGACC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss39118419	mCV22708355	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs29783188					SNP	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:12474648 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lgals8	lectin, galactose binding, soluble 8			Intron
				Noncoding-Transcript-Variant
Rr369646	regulatory region 369646			816 bp upstream
Rr369647	regulatory region 369647			1382 bp upstream
Rr474992	regulatory region 474992			453 bp proximal
Rr474993	regulatory region 474993			1716 bp proximal
Tssr118345	transcription start site region 118345			903 bp upstream
Tssr121451	transcription start site region 121451			641 bp upstream
Tssr121452	transcription start site region 121452			485 bp upstream
Tssr121453	transcription start site region 121453			1332 bp downstream
Tssr121454	transcription start site region 121454			1643 bp downstream
Tssr121455	transcription start site region 121455			1665 bp downstream
Tssr121456	transcription start site region 121456			1771 bp downstream
Tssr121457	transcription start site region 121457			1795 bp downstream