rs29783220 SNP Detail

Summary

• ID
  rs29783220
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:86578728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACAGAACA ATCAAGCAGC
  CTTCAGACAC CAAAGCCTTT TCTTTTTAGT GTAATCGCAT GGCCAGATTC TATGGTATTC
  GCCTAAACAC TGAGGAATGG TTATGGGGTT ATATATTGCC TAGATACCTG TGAAATGTTT
  TCTAATTATT TTACTTTACT CTACCAGTAC AACGATAGCT TTTAGGCTAT GCTTGAATTC
  W
  GAAGTTTCTT TGGCCTGGCT TTTAAATTAT CTAGACTCAG TTATTTTATA GAAAGCATTA
  TATTAGCATT GCACAGTTCT TCAAAAACAT TTCTTGTACT TAACATGACA CCTTTCATTG
  TGAGTTTTAC AACCCATAAA TAATTTACCT CATAACATCT GAGAAAGGGG TATACTTTAC
  AAAACTCCCT CTCCTAAATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss46339374	mCV23664597	ABI	CRAMUS_MOUSE	f	SNP	T	A
ss136760245	ENSMUSSNP749888	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss323057518	CHEV_9_86590708	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs29783220					SNP	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:86578728 () rs orientation: forward

Symbol	Name	Function Class
A330041J22Rik	RIKEN cDNA A330041J22 gene	within coordinates
Cpgi22104	CpG island 22104	306 bp distal
Me1	malic enzyme 1, NADP(+)-dependent, cytosolic	761 bp upstream
Rr205233	regulatory region 205233	308 bp proximal
Rr206830	regulatory region 206830	127 bp distal
Rr211051	regulatory region 211051	1874 bp proximal
Tssr90786	transcription start site region 90786	1019 bp upstream
Tssr90787	transcription start site region 90787	997 bp upstream
Tssr90788	transcription start site region 90788	886 bp upstream
Tssr90789	transcription start site region 90789	821 bp upstream
Tssr90790	transcription start site region 90790	717 bp upstream