rs29783372 SNP Detail

Summary

• ID
  rs29783372
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:53624865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACTGCCCCAC CAGACCGCCA GGCCTAAGTA TGCCAGGATT TCTGACCTTT GGCCACCATA
  CCATTTAAGG CTGAAATCCT GGATGTGTTG TGGGGCATTG CCCCAGGCCT AGGAATACAG
  GCACTCCAAA TTTGTTAAAC AAGTTAAGAC TCTTCATGTT TCTGAACCTC CATTTCGCTG
  ACAATAAAAT GGATAACTAC TACTTATCCC TCGGGTGGCT TAGAGAGCTA CATGTTGGAG
  TGCCCAGAGC CCCACTTGGG GGGTAATGAG CAAATCAATG TGCCCAAGAG CTTTTTTTTT
  Y
  CATGGGCCCA AACTGCTGAT CCCTCTGAAC TCTGCTGTGA AACGGCCTCT TCTGTTAACA
  AGAGGCTCTC GGCTGCCGCA CAAAGGAGAT CAGATAAGAT AATGTATTGA AAAGCACTGT
  GCAAACTGGA GTTTAAATTC TTTAAGTCCT TAATCTCTGC GCCCTTTCAG CCTTTCAGAA
  TTTCCAGCAG GGTGGAGAGA GACAGCCAGA GGGGACAGCC ACTGACGCCT GGGTATATGG
  TCTTGTTTTG TTCACAAAAT ACTTTGCATC TCTAGTCCAG AGGGCCGGGC TGAAAGGTAG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39119039	mCV22986270	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29783372					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:53624865 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5623	CpG island 5623	1292 bp proximal
Gm33763	predicted gene, 33763	within coordinates
Msx2	msh homeobox 2	within coordinates
Rr281405	regulatory region 281405	within coordinates
Tssr122586	transcription start site region 122586	1883 bp downstream
Tssr122587	transcription start site region 122587	1906 bp downstream
Tssr122588	transcription start site region 122588	1971 bp downstream
Tssr122589	transcription start site region 122589	1993 bp downstream