rs29784377 SNP Detail

Summary

• ID
  rs29784377
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:23935322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAAGGGCAA CTACTCGGAG CGCGTGGGCG CCGGCGCCCC
  GGTGTACCTG GCGGCCGTGC TGGAGTACCT GACGGCCGAG ATCCTGGAGC TGGCGGGCAA
  Y
  GCGGCCCGCG ACAACAAGAA GACGCGCATC ATCCCGCGCC ACCTGCAGCT GGCCATCCGC
  AACGACGAGG AGCTCAACAA GCTGCTGGGC CGCGTGACC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39118907	mCV22702816	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29784377					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23935322 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5374	CpG island 5374	163 bp proximal
Gm54518	predicted gene, 54518	39 bp downstream
H2ac4	H2A clustered histone 4	Coding-Synonymous
H3c2	H3 clustered histone 2	1006 bp upstream
Rr403663	regulatory region 403663	199 bp downstream
Rr403664	regulatory region 403664	746 bp upstream
Rr475938	regulatory region 475938	203 bp distal
Rr475939	regulatory region 475939	33 bp proximal
Rr475940	regulatory region 475940	270 bp proximal
Rr475941	regulatory region 475941	438 bp proximal
Tssr118860	transcription start site region 118860	253 bp downstream
Tssr118861	transcription start site region 118861	221 bp downstream
Tssr118862	transcription start site region 118862	132 bp downstream
Tssr118863	transcription start site region 118863	1002 bp upstream
Tssr121747	transcription start site region 121747	856 bp downstream