rs29784827 SNP Detail

Summary

• ID
  rs29784827
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:109691191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAGAATCG GGTTGGAAAA
  TCAAGAAGCA GCTCCTGACT GAAATCCATT CACAGCCTCT GTCACAGAAC TTTCACCTCT
  AATAATTTCT CCTATCGTCA AAATTCCCCT TAACCTCATT AATTCAATGG CTTGTATTCT
  CTTAGATAAT CAAGGTTTCA CTGATTTAGC AGAATGTTAA ATAGAACCCA GGGAAATTAA
  M
  ACAACAACAA AGAAGAAGAG AGCCAAGAAC GAACGCTTTC CGACAACATT TGCTGCTTAA
  GCACTTAACA CATAGACCAC TCTGGACAGG GGGCAGGCGG GGCACAGAGC AGAAAAAGGA
  GCTTCTTTTA TAAATTATAA GTTTTTCATT CAAAAAAAAA TGTCATGGCC CAATTTCTCC
  AAAGATGGAT TCACACACAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46881627	NES10695559	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29784827					SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46881627	NES10695559	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109691191 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13717	CpG island 13717			925 bp distal
Ntng1	netrin G1			Intron
				Noncoding-Transcript-Variant
Rr583445	regulatory region 583445			1472 bp distal