rs29784906 SNP Detail

Summary

• ID
  rs29784906
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:35021935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCCTGTCCC CAGAGACACA AATCCCTTGG CTTCACAGCA
  TCTCAGAGGA GCCTTTGGCT CTGCCAGTAC TCAGAGGTAC CTTCTGAACT CAAGCTTGGA
  R
  GCGTGAGATG TGTGCAGACT GGAGAAAGCA GAGGGACTCG GGAAGCCTTA CTAGAACACT
  GGCTCAGGGT GACCTGAAGG ACAAAGGCAA TTCAGAATG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46339897	mCV23997785	ABI	CRAMUS_MOUSE	f	SNP		A	A				A	G
ss50670801	NES14013389	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	G	A			A	G		G	A	G		A
ss322899072	CHEV_9_34918224	CHEVERUD	SCREENING_POP	f	SNP											G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29784906					SNP	A	A	A	A	G	A	A	G	A	G	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50670801	NES14013389	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:35021935 () rs orientation: forward

Symbol	Name	Function Class
Rr206179	regulatory region 206179	1065 bp proximal
Rr383192	regulatory region 383192	705 bp upstream
St3gal4	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	within coordinates