rs29785568 SNP Detail

Summary

• ID
  rs29785568
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23716086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGACTAGAG CGTGGGGCGG
  GCCTGAGTGC ACAGCACCGA CGGTGGTTGG CTGTTTCTGT GCTTTGGAGC GTCTGCGCAG
  ACTGCGGAAA TCCGGCGTGT CCTGGAGACC CATGCAGTGT GGGCTTTTCT GGCACTCACG
  GTGGAGAGGT GTTTACTAAA AAAGGAATGT TTCATTAAGG TTGGGCATTA GATAAAGTAT
  W
  AAAAAACTGG TAGTTCTAAT ATGCAACTTT ATGGGAACGT CCCGATTGTT AACATGTAGG
  AGTGCATTCG TGATGGATGT TTTAATAAAA TCTAAGTCAG TATAGGCAGT TTTGATATTT
  TCGATGTGGT CTAAGTGTAT CTTCAGGAAT TTGGTTTCAG CCAAGAGTGA TAAGATTTTA
  GAGTACTGTA CACCGAAAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47380429	NES11359118	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	T	T	T	T	A		A	A	T	A		T
ss324289718	CHEV_13_23623785	CHEVERUD	SCREENING_POP	f	SNP											T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29785568					SNP	T	T	T	T	A	T	T	T	T	A	T	A	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47380429	NES11359118	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23716086 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5358	CpG island 5358	42 bp distal
Gm11335	predicted gene 11335	988 bp upstream
Gm60769	predicted gene, 60769	1605 bp downstream
H2ac10	H2A clustered histone 10	1990 bp upstream
H4c8	H4 clustered histone 8	438 bp downstream
n-TMcat9	nuclear encoded tRNA methionine 9 (anticodon CAT)	1497 bp upstream
Rr281120	regulatory region 281120	within coordinates
Rr403647	regulatory region 403647	1725 bp upstream
Tssr4007	transcription start site region 4007	1769 bp downstream
Tssr118826	transcription start site region 118826	828 bp downstream
Tssr118827	transcription start site region 118827	63 bp downstream
Tssr118828	transcription start site region 118828	1953 bp upstream
Tssr121710	transcription start site region 121710	973 bp upstream
Tssr121711	transcription start site region 121711	950 bp upstream
Tssr121712	transcription start site region 121712	1740 bp downstream