rs29785570 SNP Detail

Summary

• ID
  rs29785570
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23717898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCTCAGGCA TAGTGAACAG AAAACAACAC CAAGAAAAAA
  AAATATTAGC CCTTGTTGCA ATTTAAATAA AGCTGTGGCT ATCCTTTTAG AGTCCTGAAA
  Y
  ATTATGCGTT AACTATCCAA TCAAAACAAG GTTTTTTCAT ATACAAGCTA CCATTGGTTT
  AGGTAAAACT CTATGTGTAG CCAACGAGAT CACTCCGTTT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47380432	NES11358978	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29785570					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47380432	NES11358978	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23717898 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5358	CpG island 5358	1854 bp distal
Cpgi5359	CpG island 5359	1429 bp proximal
Gm55640	predicted gene, 55640	386 bp downstream
Gm60769	predicted gene, 60769	25 bp upstream
H2ac10	H2A clustered histone 10	178 bp upstream
H3c8	H3 clustered histone 8	1690 bp upstream
Rr281120	regulatory region 281120	within coordinates
Rr403647	regulatory region 403647	within coordinates
Rr403648	regulatory region 403648	1408 bp upstream
Tssr4007	transcription start site region 4007	23 bp upstream
Tssr118827	transcription start site region 118827	1875 bp downstream
Tssr118828	transcription start site region 118828	141 bp upstream
Tssr118829	transcription start site region 118829	1683 bp upstream
Tssr121712	transcription start site region 121712	67 bp upstream
Tssr121713	transcription start site region 121713	1437 bp downstream