rs29785573 SNP Detail

Summary

• ID
  rs29785573
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23717983 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGCGGACT TGGCGGGCTC
  AGGCATAGTG AACAGAAAAC AACACCAAGA AAAAAAAATA TTAGCCCTTG TTGCAATTTA
  AATAAAGCTG TGGCTATCCT TTTAGAGTCC TGAAATATTA TGCGTTAACT ATCCAATCAA
  AACAAGGTTT TTTCATATAC AAGCTACCAT TGGTTTAGGT AAAACTCTAT GTGTAGCCAA
  Y
  GAGATCACTC CGTTTTCGCG CCAGAAGTTG AGTATTAGAA TGGTGCTGTG GCTGCATCAT
  TATACGCTGA ACAGATCCTG ACAGCAAGGT ACCTACAATG TCTGGACGCG GCAAACAGGG
  TGGCAAGGCT CGCGCCAAGG CCAAGACCCG CTCCTCCCGG GCCGGCCTGC AGTTCCCCGT
  GGGCCGCGTG CACCGGCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47380435	NES11358979	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	T		T	T	C	T		C
ss324289720	CHEV_13_23625682	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29785573					SNP	C	C	C	C	T	C	C	C	C	T	C	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47380435	NES11358979	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23717983 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5358	CpG island 5358	1939 bp distal
Cpgi5359	CpG island 5359	1344 bp proximal
Gm55640	predicted gene, 55640	301 bp downstream
Gm60769	predicted gene, 60769	110 bp upstream
H2ac10	H2A clustered histone 10	93 bp upstream
H3c8	H3 clustered histone 8	1605 bp upstream
Rr281120	regulatory region 281120	within coordinates
Rr403647	regulatory region 403647	within coordinates
Rr403648	regulatory region 403648	1323 bp upstream
Tssr4007	transcription start site region 4007	108 bp upstream
Tssr118827	transcription start site region 118827	1960 bp downstream
Tssr118828	transcription start site region 118828	56 bp upstream
Tssr118829	transcription start site region 118829	1598 bp upstream
Tssr121712	transcription start site region 121712	152 bp upstream
Tssr121713	transcription start site region 121713	1352 bp downstream