rs29785659 SNP Detail

Summary

• ID
  rs29785659
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41489653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGA GCTCTTCCTT CCCTTTCCTT
  Y
  GGCTTCCAGC CGTGCATCTG AAGTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46339701	mCV23834223	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
ss136358636	ENSMUSSNP4064382	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
ss322927311	CHEV_9_41386440	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29785659					SNP	C	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41489653 () rs orientation: forward

Symbol	Name	Function Class
Gm51670	predicted gene, 51670	within coordinates
Gm69589	predicted gene, 69589	within coordinates
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Rr677060	regulatory region 677060	647 bp proximal
Rr677061	regulatory region 677061	1151 bp proximal
Rr677062	regulatory region 677062	1892 bp proximal
Tssr84512	transcription start site region 84512	1303 bp upstream
Tssr84513	transcription start site region 84513	1331 bp upstream
Tssr84514	transcription start site region 84514	1493 bp upstream
Tssr84515	transcription start site region 84515	1578 bp upstream
Tssr84516	transcription start site region 84516	1613 bp upstream
Tssr84517	transcription start site region 84517	1646 bp upstream
Tssr88995	transcription start site region 88995	1155 bp downstream
Tssr88996	transcription start site region 88996	1189 bp downstream