rs29785802 SNP Detail

Summary

• ID
  rs29785802
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:109759649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTGTTCT GACCACCTTA
  CTGAGTAAAC CCTATGTGCA CCCGTGCAAA TATAGCTGCA TGTGCAGTAG GTCTCTCTTG
  ATACATTATG AGGTGCAAGC ATTAACTGCT GAAAAATCAT TTGACAGCTT GTTTGATTAA
  TTTCACATAG TCATCCTTCT TACTCTTCTT TTACCTGTCA GATACGTGGA TTAAACCCTG
  Y
  AATAGGAACT TAATTGAGCA GAATAATTCA AGAAAGCATT ACACTGTTCA TATTGATCAT
  GGATTCACCA ATGATTCAGC TTCTCGTTGA TTCACATTTC AGAGTTTGGC CTGATGTGGT
  AGAAATGTGG ACATTCATTT ACTCTGCATC TGCAGTACGA GTCCTACCAT GCACTATAAT
  ACTTTGAGCT AACACAGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss46882932	NES10708211	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs29785802					SNP	T	T	T	T	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46882932	NES10708211	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109759649 () rs orientation: forward

Symbol	Name	Function Class
Ntng1	netrin G1	within coordinates
Rr65057	regulatory region 65057	752 bp proximal