rs29785978 SNP Detail

Summary

• ID
  rs29785978
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23804261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACTCTTGT CTTAAACCCT
  TTTTCTATAA GACACATACC TTATAAAAAG AAAAGGTTGT GGGTTGGAAT GAAGAAGAAA
  GCAAAAGCTC CAATTGAAAC GAAATTGTTT GAGAGTGCTC ATTTGTGCTC AAGGAGAGCA
  ATCTCGGGAT GCTAAGGTCG GTTCAGTCTC TAGAAGAGGA ACTTGGATAC GTAAGCGCAC
  R
  GATAAAGAGC TGCATGCTTA AAACATCTTT AGTTAATTTT AGTACCTATA ATTGATAGCA
  AATTAACTAT TCTGAACTTG TATGCCATGT GGATGTATGT GCCAGTGAGT GTGTGGTTCC
  CTGAAACCAT TACGATCACC CTCATTTCCA GGGCACCACC GAGTTCACAT AAACACAAGT
  TTGAAGCATG AGAACCCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47381728	NES11354407	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	G	A	A	G		G	G	A	G		A
ss324290400	CHEV_13_23712147	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29785978					SNP	A	A	A	A	G	A	G	A	A	G	A	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47381728	NES11354407	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23804261 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5367	CpG island 5367	1004 bp proximal
Cpgi5368	CpG island 5368	1755 bp proximal
Gm11398	predicted gene 11398	452 bp downstream
H1f4	H1.4 linker histone, cluster member	1499 bp downstream
H2bc6	H2B clustered histone 6	within coordinates
Rr403657	regulatory region 403657	791 bp upstream
Rr475906	regulatory region 475906	within coordinates
Rr475907	regulatory region 475907	806 bp proximal
Rr475908	regulatory region 475908	1883 bp proximal
Tssr118843	transcription start site region 118843	1573 bp upstream
Tssr118844	transcription start site region 118844	1717 bp upstream
Tssr121728	transcription start site region 121728	812 bp downstream
Tssr121729	transcription start site region 121729	1611 bp downstream
Tssr121730	transcription start site region 121730	1659 bp downstream
Tssr121731	transcription start site region 121731	1712 bp downstream
Tssr121732	transcription start site region 121732	1739 bp downstream