rs29786385 SNP Detail

Summary

• ID
  rs29786385
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45979136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGAAAGC CGTCTTTGAG
  GTTCTAGTAG GAGATTATAA TGGCTTCTGG TCAGCTAGCT CCCAGCTGTG GTCTTTATAG
  GGCAGAGGTG GGAACTCTCA GCGGTTGCCA GCCGCTCTTG CCTTGGGCTG GGCCTTGGAG
  GAACTCAAGG GAAACTCCCA GCCCAGGTCC CCAGCCTGGC TTTCCTAGGG GCTTAGCAGG
  Y
  TCTAGCCCTG AAAGCGATAC TCTTGTAGTA CAAGAGTAAC CACAAACCCA TGTGGACTGG
  AGGCCAGAAA GGGTGTTGCC ACATGTCACT CTCCTCCCAT GCCCCTTGGC TGCTGAACAG
  ACGGTAACCC CACCCCACCC CGCGCCTGAA GCAAATGTAG ATTGACAGTC TTTTCCAAAC
  TGTCCTTAGA TAGAAGCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46340496	mCV25176560	ABI	CRAMUS_MOUSE	f	SNP	T	T	C		C
ss47695638	NES11315585	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	T	T	C	C	C
ss136422464	ENSMUSSNP3485292	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29786385					SNP	T	T	C	C	C	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47695638	NES11315585	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45979136 () rs orientation: forward

Symbol	Name	Function Class
Gm46110	predicted gene, 46110	within coordinates
Rr209232	regulatory region 209232	within coordinates
Rr383304	regulatory region 383304	668 bp upstream
Sik3	SIK family kinase 3	within coordinates