rs29786616 SNP Detail

Summary

• ID
  rs29786616
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23718063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAAAGCTG TGGCTATCCT
  TTTAGAGTCC TGAAATATTA TGCGTTAACT ATCCAATCAA AACAAGGTTT TTTCATATAC
  AAGCTACCAT TGGTTTAGGT AAAACTCTAT GTGTAGCCAA CGAGATCACT CCGTTTTCGC
  GCCAGAAGTT GAGTATTAGA ATGGTGCTGT GGCTGCATCA TTATACGCTG AACAGATCCT
  R
  ACAGCAAGGT ACCTACAATG TCTGGACGCG GCAAACAGGG TGGCAAGGCT CGCGCCAAGG
  CCAAGACCCG CTCCTCCCGG GCCGGCCTGC AGTTCCCCGT GGGCCGCGTG CACCGGCTGC
  TCCGCAAGGG CAACTACTCG GAGCGCGTGG GCGCCGGCGC CCCGGTGTAC CTGGCGGCCG
  TGCTGGAGTA CCTGACGGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47380438	NES11358980	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29786616					SNP	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47380438	NES11358980	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23718063 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5359	CpG island 5359	1264 bp proximal
Gm55640	predicted gene, 55640	221 bp downstream
Gm60769	predicted gene, 60769	190 bp upstream
H2ac10	H2A clustered histone 10	13 bp upstream
H3c8	H3 clustered histone 8	1525 bp upstream
Rr403647	regulatory region 403647	within coordinates
Rr403648	regulatory region 403648	1243 bp upstream
Tssr4007	transcription start site region 4007	188 bp upstream
Tssr118828	transcription start site region 118828	11 bp downstream
Tssr118829	transcription start site region 118829	1518 bp upstream
Tssr121712	transcription start site region 121712	232 bp upstream
Tssr121713	transcription start site region 121713	1272 bp downstream