rs29786619 SNP Detail

Summary

• ID
  rs29786619
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23718578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCGTGACCA TCGCGCAGGG
  CGGCGTCCTG CCCAACATCC AGGCCGTGCT GCTGCCCAAG AAGACCGAGA GCCACCATAA
  GCCCAAGGGA AAGTAAGCCA GTGAGCTAAG TTTTTTTTTT TTTTTTTTTT TTTTTTTAAA
  CAAAACCCAA AGGCTCTTTT CAGAGCCACC ACTTCTTCAT ATAAGAGTCT AGTAACATGG
  Y
  TAATTTAGCT TGTGGAAAAA CCTATATTAA TGTTTCAAGC ACAAAACCAT AATTCTGGTA
  GGCTGAGGTA ATTCTTAGGC AACTGCTTTG TCTTCCTCAC GCAGAGAAAT ATTGGATGTA
  GCATAAACAT AGATTTACAC GTTGCACAAA ACTTTTGGTC TTGCAGTCCT CTACATCTTC
  GTATTGCTCC GGAGAGGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47380441	NES11358981	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C		T	T	C		T
ss324289724	CHEV_13_23626277	CHEVERUD	SCREENING_POP	f	SNP										T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29786619					SNP	T	T	T	T	T	T	T	T	C	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47380441	NES11358981	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23718578 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5359	CpG island 5359	749 bp proximal
Gm55640	predicted gene, 55640	154 bp upstream
Gm60769	predicted gene, 60769	705 bp upstream
H2ac10	H2A clustered histone 10	104 bp downstream
H3c8	H3 clustered histone 8	1010 bp upstream
Rr281120	regulatory region 281120	within coordinates
Rr403647	regulatory region 403647	466 bp downstream
Rr403648	regulatory region 403648	728 bp upstream
Tssr4007	transcription start site region 4007	703 bp upstream
Tssr118828	transcription start site region 118828	526 bp downstream
Tssr118829	transcription start site region 118829	1003 bp upstream
Tssr121712	transcription start site region 121712	747 bp upstream
Tssr121713	transcription start site region 121713	757 bp downstream