rs29786622 SNP Detail

Summary

• ID
  rs29786622
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23718696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTTTTT TTTTTTTTTA
  AACAAAACCC AAAGGCTCTT TTCAGAGCCA CCACTTCTTC ATATAAGAGT CTAGTAACAT
  GGTTAATTTA GCTTGTGGAA AAACCTATAT TAATGTTTCA AGCACAAAAC CATAATTCTG
  GTAGGCTGAG GTAATTCTTA GGCAACTGCT TTGTCTTCCT CACGCAGAGA AATATTGGAT
  R
  TAGCATAAAC ATAGATTTAC ACGTTGCACA AAACTTTTGG TCTTGCAGTC CTCTACATCT
  TCGTATTGCT CCGGAGAGGC AGCAGACATT CGGGGTTGGG AGAAAATACA AAGGGTCTTA
  CGGAAATTGT TAGGCAAGTC TTTACAAAGT CGCAAGATTC AGGATACTTG ACCTGTGGTT
  CCTGTTACAT TACTGCTTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47380444	NES11358982	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29786622					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47380444	NES11358982	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23718696 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5359	CpG island 5359	631 bp proximal
Gm55640	predicted gene, 55640	272 bp upstream
Gm60769	predicted gene, 60769	823 bp upstream
H2ac10	H2A clustered histone 10	222 bp downstream
H3c8	H3 clustered histone 8	892 bp upstream
Rr281120	regulatory region 281120	within coordinates
Rr403647	regulatory region 403647	584 bp downstream
Rr403648	regulatory region 403648	610 bp upstream
Tssr4007	transcription start site region 4007	821 bp upstream
Tssr118828	transcription start site region 118828	644 bp downstream
Tssr118829	transcription start site region 118829	885 bp upstream
Tssr121712	transcription start site region 121712	865 bp upstream
Tssr121713	transcription start site region 121713	639 bp downstream