rs29786778 SNP Detail

Summary

• ID
  rs29786778
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:109759819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACCTGTCA GATACGTGGA
  TTAAACCCTG TAATAGGAAC TTAATTGAGC AGAATAATTC AAGAAAGCAT TACACTGTTC
  ATATTGATCA TGGATTCACC AATGATTCAG CTTCTCGTTG ATTCACATTT CAGAGTTTGG
  CCTGATGTGG TAGAAATGTG GACATTCATT TACTCTGCAT CTGCAGTACG AGTCCTACCA
  W
  GCACTATAAT ACTTTGAGCT AACACAGAAT CTCAGCAGCC AGAACATCTA GGTTCAAAGG
  ATGGCTCCAA CTCTTAAATT CATACTAACT TTGGGGTCTT GGGAAGTTCC TTGTGATCTC
  TGTGTTCACC TAGTTTTTCA ATGTCTCTAT TTGTTGTGAG TATTATTATA TAAATTGATA
  GATGGAAATC ATAAAGGCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46882938	NES10708213	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29786778					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46882938	NES10708213	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109759819 () rs orientation: forward

Symbol	Name	Function Class
Ntng1	netrin G1	within coordinates
Rr65057	regulatory region 65057	582 bp proximal