rs29786880 SNP Detail

Summary

• ID
  rs29786880
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44435608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCTT AGAACCCCTG GACTCCTAGC
  K
  AGATGTCTGG GCACATAGCT CAGGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss46342202	mCV24320730	ABI	CRAMUS_MOUSE	f	SNP		G	G					T		G
ss47688796	NES11324793	PERLEGEN	MM_PANEL2	f	SNP	G		G	T	G	G	G		T	G		G	G	G
ss136396564	ENSMUSSNP3814837	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							G
ss322941026	CHEV_9_44332394	CHEVERUD	SCREENING_POP	f	SNP											G				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs29786880					SNP	G	G	G	T	G	G	G	T	T	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47688796	NES11324793	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44435608 () rs orientation: forward

Symbol	Name	Function Class
Cxcr5	C-X-C motif chemokine receptor 5	within coordinates
Rr200337	regulatory region 200337	1008 bp distal
Rr203858	regulatory region 203858	within coordinates
Rr206318	regulatory region 206318	1392 bp proximal
Rr209144	regulatory region 209144	1586 bp distal
Tssr89167	transcription start site region 89167	1657 bp downstream