rs29786914 SNP Detail

Summary

• ID
  rs29786914
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23804807 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCATAGTTT TAAGTTTAAG
  GATACTTGAA ACAACAACAA CTCATTTGTT GAAAGAATGC CTGGCTCTTT AAAGTCCTTG
  AAATCATTCG TGCAAATGCG CACTTGGTTT GTTTTCTTGG TAACAGGCTT GGTGCTCTGC
  CAGCTTCCTG GGCAATGCAG GAGAATGGCA GTCTGGATCA ACTGAGATAT GACGGTTACT
  Y
  GCTTTTTGTA ATGCGGCACG ATGCAGGCAA TGTGCTTTAA AATGTAATTG ATGCCCATGG
  CCTTGGATAA GATGCTCATG TTGGGGCTCA CCTGCTTCAG CACGTTGTAC ACTTGCTAGA
  AGCTCTCCTT TCAGTAGCGT TTGCGCTCCT TGTCCTTCTG TTTGTTGATG GCAGCTTCTA
  AGAATCCTTC TGTGGGGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47381734	NES11354409	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29786914					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47381734	NES11354409	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23804807 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5367	CpG island 5367	458 bp proximal
Cpgi5368	CpG island 5368	1209 bp proximal
Gm11398	predicted gene 11398	within coordinates
H1f4	H1.4 linker histone, cluster member	953 bp downstream
H2bc6	H2B clustered histone 6	within coordinates
Rr403657	regulatory region 403657	245 bp upstream
Rr475906	regulatory region 475906	within coordinates
Rr475907	regulatory region 475907	260 bp proximal
Rr475908	regulatory region 475908	1337 bp proximal
Rr475909	regulatory region 475909	1724 bp proximal
Tssr118843	transcription start site region 118843	1027 bp upstream
Tssr118844	transcription start site region 118844	1171 bp upstream
Tssr121728	transcription start site region 121728	266 bp downstream
Tssr121729	transcription start site region 121729	1065 bp downstream
Tssr121730	transcription start site region 121730	1113 bp downstream
Tssr121731	transcription start site region 121731	1166 bp downstream
Tssr121732	transcription start site region 121732	1193 bp downstream
Tssr121733	transcription start site region 121733	1724 bp downstream