rs29786920 SNP Detail

Summary

• ID
  rs29786920
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23805265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAACATTT GGTAAAATAC
  CTACTCCGTC ACCAGTTAAC ACCACATTCA TTTACATTAC GCAGTATTCA AATGAGGTTA
  ATAAGATTTC TTTCAGGATT GGGTTAGTTT TAGTGTTTCG TCACGAACAG GAACGTAAAC
  GACACTTGAA GGTCTACTGT CTCATTGGCT GTCTTGTCAC TTCGCTTTCA CCAATCGGGA
  M
  GTACGAATTA AACTGCACAA ATCTGCTATA GCTAACCTAT TTAAGCACGA TCGCTATCAA
  ACATGGGGGA ACACAGAAAA AAAAGTACTC TAGTTGGGTT TGTATGCTTG ATTTCAGCAG
  TCAGAACTGA GATGAGATGC GGGTGGGGTT GTCAGGACAT CGATCCTGCT CTTTACGCAC
  TGAATCGCTC AATGCTTAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47381740	NES11354411	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29786920					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47381740	NES11354411	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23805265 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5367	CpG island 5367	within coordinates
Cpgi5368	CpG island 5368	751 bp proximal
Gm11398	predicted gene 11398	233 bp upstream
H1f4	H1.4 linker histone, cluster member	495 bp downstream
H2bc6	H2B clustered histone 6	174 bp upstream
Rr403657	regulatory region 403657	within coordinates
Rr475906	regulatory region 475906	199 bp distal
Rr475907	regulatory region 475907	within coordinates
Rr475908	regulatory region 475908	879 bp proximal
Rr475909	regulatory region 475909	1266 bp proximal
Tssr118843	transcription start site region 118843	569 bp upstream
Tssr118844	transcription start site region 118844	713 bp upstream
Tssr121728	transcription start site region 121728	167 bp upstream
Tssr121729	transcription start site region 121729	607 bp downstream
Tssr121730	transcription start site region 121730	655 bp downstream
Tssr121731	transcription start site region 121731	708 bp downstream
Tssr121732	transcription start site region 121732	735 bp downstream
Tssr121733	transcription start site region 121733	1266 bp downstream