rs29787058 SNP Detail

Summary

• ID
  rs29787058
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:44053067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCTAGAGA AAGACAACGC
  CCCAGCCACC TTCTGTTAAA CGTAGAGACT TAGCTGGGGG ACTTCTGTCT TTTCCTCCCC
  CACCCCATTC CTGCTGCTTG CTTTAAGGAT GTTGCAGCCC ATCAGCTTTT GCTTCGGCCT
  TTTCTGTCTG GTGGTCACGC TGTAAACCTT GCTGGCTCTC CATGTTCTGG TGACTTCTCT
  S
  TATCCATTTT CAGGGAGAGA AATACATCGA TCTGAGGCAT TAGATGGCTC CCATTGCACT
  GCTCGCAGCT CCCTGCTCAG ACTTCACCCC AAGCTGAAGC CTCCAGAGGG ACAGCAGGGA
  CGAGCCACAC TCAACCCCCC CCCTGCACAT CAGGTCTGAG AGCTAGGAGC TGGGACAGGA
  GTCGTCTGCA GGAGCTCAGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46343004	mCV25148510	ABI	CRAMUS_MOUSE	f	SNP		C	G						G
ss47686398	NES11345099	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29787058					SNP	G	C	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47686398	NES11345099	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44053067 () rs orientation: forward

Symbol	Name	Function Class
Cbl	Casitas B-lineage lymphoma	1206 bp downstream
Mcam	melanoma cell adhesion molecule	Intron
Rr383290	regulatory region 383290	417 bp downstream
Tssr84626	transcription start site region 84626	1161 bp downstream