rs29787094 SNP Detail

Summary

• ID
  rs29787094
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45817053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGCTGCA AAATAAACTC
  GGCCTTCTAT GGTAACAAGA AAAACTAGGT GGTAAAAGTA GGATTAGTTC CCATTCCTGC
  TTTTATTTTG ACAGCATCCC ATGAATAGAA TATCTCTGAA CCCAGAAGAA TGCACAAGAG
  CAGATACCGA GTCGGGCTGA ATCAATAGTC ACAGCTCAGT GCCTCAGTTT CCTCTCATAA
  K
  AAAAAGCTCC TAGGTGAAAA TGGGCCCTGA AACGCCATTA TTGCATCTCG GATGCAATCA
  GTCTGCCTAC AATAGGGTCG AGATCATTGC CTCCAACAGG GAACAAGGTC TGGGTCACCG
  ATGCCCAGTA AACGAAAACC TTAGGGCAAG GGTCATACGT GAAACTCCGC AGCTAGAGCC
  CCAAACGAGA GGGATGGGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46341206	mCV24328004	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	T	T
ss136420507	ENSMUSSNP6076949	ENSEMBL	ENSEMBL_Sanger	f	SNP			T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29787094					SNP	G	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45817053 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21697	CpG island 21697	within coordinates
Pcsk7	proprotein convertase subtilisin/kexin type 7	742 bp upstream
Rnf214	ring finger protein 214	within coordinates
Rr677992	regulatory region 677992	within coordinates
Rr677993	regulatory region 677993	642 bp proximal
Rr677994	regulatory region 677994	686 bp proximal
Rr677995	regulatory region 677995	753 bp proximal
Rr677996	regulatory region 677996	754 bp proximal
Rr677997	regulatory region 677997	1104 bp proximal
Rr677998	regulatory region 677998	1241 bp proximal
Rr677999	regulatory region 677999	1903 bp proximal
Tssr84815	transcription start site region 84815	758 bp upstream
Tssr84816	transcription start site region 84816	1170 bp upstream
Tssr89273	transcription start site region 89273	614 bp downstream
Tssr89274	transcription start site region 89274	1082 bp downstream
Tssr89275	transcription start site region 89275	1143 bp downstream
Tssr89276	transcription start site region 89276	1830 bp downstream