rs29787229 SNP Detail

Summary

• ID
  rs29787229
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:65367606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATTCTCT CTCCCACAAA
  CACACACACG ATTAAAAGTA ATAATAATAA AAAATATTTT TAAAAGTCCC TAAAACATTA
  GGATCTTGCT TTAGGAACCT TACAAATTTT CAAACAAGAT TGACAGGTCA CTCAATATTA
  TTATGCATTA TTTCAGAGCA AAGCTGTAAG CTAACTGAAA GGTGTTGTGG CATCTGCCAC
  M
  TCTCTCGTAA GAACAGTGAC TAGACTGTGC CTGACAGAAG AGGGCAAACC AGCGCTGAGT
  ATACCCCCTC AACATCAGCA CAAAGCCATA AAAGGAGACA AGGCTTTGAA AGGAGGTCAG
  AGGACAGCGT CTATACAAAA GGTAAAAACA ATTTTGCTGA GAAAGCATAT GCAGTTGGGA
  GGCTGAAGGG GAATGGGACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46340310	mCV24186789	ABI	CRAMUS_MOUSE	f	SNP	C	A	A	A
ss322986733	CHEV_9_65308131	CHEVERUD	SCREENING_POP	f	SNP					A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29787229					SNP	C	A	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:65367606 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21949	CpG island 21949	359 bp proximal
Gm47270	predicted gene, 47270	within coordinates
Rr401463	regulatory region 401463	423 bp upstream
Rr681488	regulatory region 681488	133 bp proximal
Rr681489	regulatory region 681489	640 bp proximal
Rr681490	regulatory region 681490	1931 bp proximal
Spg21	SPG21, maspardin	623 bp upstream
Tssr2916	transcription start site region 2916	588 bp upstream
Tssr85703	transcription start site region 85703	602 bp upstream
Tssr85704	transcription start site region 85704	660 bp upstream
Tssr85705	transcription start site region 85705	997 bp upstream