rs29787616 SNP Detail

Summary

• ID
  rs29787616
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:119230843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAGC CCATAAATGG GAGCTGGAGG
  R
  CAGAGGTCCT AGGTTATGGG GACCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46339720	mCV25199147	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss323219421	CHEV_9_119310895	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29787616					SNP	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:119230843 () rs orientation: forward

Symbol	Name	Function Class
Acvr2b	activin receptor IIB	341 bp upstream
Cpgi22474	CpG island 22474	within coordinates
Gm53515	predicted gene, 53515	within coordinates
Gm69683	predicted gene, 69683	309 bp upstream
Rr688480	regulatory region 688480	320 bp distal
Rr688481	regulatory region 688481	within coordinates
Rr688482	regulatory region 688482	186 bp proximal
Rr688483	regulatory region 688483	678 bp proximal
Rr688484	regulatory region 688484	743 bp proximal
Rr688485	regulatory region 688485	903 bp proximal
Tssr87682	transcription start site region 87682	304 bp upstream
Tssr87683	transcription start site region 87683	379 bp upstream
Tssr87684	transcription start site region 87684	449 bp upstream
Tssr91983	transcription start site region 91983	1698 bp downstream