rs29787704 SNP Detail

Summary

• ID
  rs29787704
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23718747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAATTCTTAG GCAACTGCTT TGTCTTCCTC ACGCAGAGAA
  ATATTGGATG TAGCATAAAC ATAGATTTAC ACGTTGCACA AAACTTTTGG TCTTGCAGTC
  Y
  TCTACATCTT CGTATTGCTC CGGAGAGGCA GCAGACATTC GGGGTTGGGA GAAAATACAA
  AGGGTCTTAC GGAAATTGTT AGGCAAGTCT TTACAAAGTC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47380447	NES11358983	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29787704					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47380447	NES11358983	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23718747 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5359	CpG island 5359	580 bp proximal
Gm55640	predicted gene, 55640	323 bp upstream
Gm60769	predicted gene, 60769	874 bp upstream
H2ac10	H2A clustered histone 10	273 bp downstream
H3c8	H3 clustered histone 8	841 bp upstream
Rr403647	regulatory region 403647	635 bp downstream
Rr403648	regulatory region 403648	559 bp upstream
Rr475877	regulatory region 475877	661 bp distal
Rr475878	regulatory region 475878	406 bp distal
Rr475879	regulatory region 475879	355 bp proximal
Tssr4007	transcription start site region 4007	872 bp upstream
Tssr118828	transcription start site region 118828	695 bp downstream
Tssr118829	transcription start site region 118829	834 bp upstream
Tssr121712	transcription start site region 121712	916 bp upstream
Tssr121713	transcription start site region 121713	588 bp downstream