rs29787710 SNP Detail

Summary

• ID
  rs29787710
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23719580 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGCAGGAG TTAACCAATC
  GGGTGTGCAG GAGTTAACCA ATCACCACTT GAATTCCTCA GCCAATAGTA CTACTGCGCG
  GGACACTTGA AAAGCAGACA CGCCTATCAG GATGCTTCTC GGTGGGAAGG AGGGGTACGA
  GCGCGGGTAC GTGTGTTGCG CGTGTGCGAA CGCAAGCGTA CTTAAAGGCC AAAGTGCGCT
  R
  CTTAGGTATC TCACTTTTCC CTACGGTTAC TTGCCATGGC TCGTACTAAG CAGACCGCTC
  GCAAGTCTAC CGGCGGCAAG GCCCCGCGCA AGCAGCTGGC CACCAAGGCC GCCCGCAAGA
  GCGCCCCGGC CACCGGCGGC GTGAAGAAGC CTCACCGCTA CCGTCCCGGC ACTGTGGCGC
  TGCGCGAGAT CCGGCGCTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47380456	NES11358915	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	A	G		G	G	A	G		A
ss324289730	CHEV_13_23627279	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29787710					SNP	A	A	A	A	G	A	A	A	A	G	A	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47380456	NES11358915	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23719580 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5359	CpG island 5359	within coordinates
Gm55640	predicted gene, 55640	1156 bp upstream
Gm60769	predicted gene, 60769	1707 bp upstream
H2ac10	H2A clustered histone 10	1106 bp downstream
H3c8	H3 clustered histone 8	8 bp upstream
Rr281120	regulatory region 281120	within coordinates
Rr403647	regulatory region 403647	1468 bp downstream
Rr403648	regulatory region 403648	within coordinates
Tssr4007	transcription start site region 4007	1705 bp upstream
Tssr118828	transcription start site region 118828	1528 bp downstream
Tssr118829	transcription start site region 118829	1 bp upstream
Tssr121712	transcription start site region 121712	1749 bp upstream
Tssr121713	transcription start site region 121713	191 bp upstream