rs29787775 SNP Detail

Summary

• ID
  rs29787775
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:115453755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGTCTTTG TGTTGGCCTG
  GAGATCAGTG GCTGATAACA ACACGGAAAA TAGTTTGATT TCCTCCCTCT CTTTCTCCCT
  CCCCGTCCCC ACCTGGGGCC TAGAGATTGA GCCTCATATA CTAGACAAAG CTCTGCCCTC
  AGTACTTTGT AATTTTGTAA ATAAATAATA AGGAATAGAA GATTTAAAGC CCAGATTGAT
  Y
  CCTGTAGCTT CTTTTTTGCT GATCTGAGAC CTTTTTTTTT ATTGGCAATC CACTTTCTAT
  AACCCATTCT GGCCCCCGCG GTTTTTTCTT TGGCTCTGAT CTCTCTTGCT GAACTTTCAG
  CGGAGGATCT CCTATCTACA GCTCTTTCTT CATCTTCGAT GCTGACGAGT CCCCTGTCTG
  GAGCAACCAC ACATACTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46340717	mCV23199197	ABI	CRAMUS_MOUSE	f	SNP		C	T				C		C
ss50798484	NES14206634	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	C		T	C	C	C	T	C	C	T	T
ss137015208	ENSMUSSNP1042642	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29787775					SNP	C	C	T	C	T	C	C	T	C	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50798484	NES14206634	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:115453755 () rs orientation: forward

Symbol	Name	Function Class
Gm68175	predicted gene, 68175	within coordinates
Gm68176	predicted gene, 68176	within coordinates
n-R5s92	nuclear encoded rRNA 5S 92	1913 bp downstream
Rr370673	regulatory region 370673	389 bp downstream
Rr687898	regulatory region 687898	252 bp distal